A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA

Richard Lavery; Krystyna Zakrzewska; David Beveridge; Thomas C. Bishop; David A. Case; Thomas Cheatham; Surjit Dixit; B. Jayaram; Filip Lankas; Charles Laughton; John H. Maddocks; Alexis Michon; Roman Osman; Modesto Orozco; Alberto Perez; Tanya Singh; Nada Spackova; Jiri Sponer

doi:10.1093/nar/gkp834

A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA

Richard Lavery
, Krystyna Zakrzewska
, David Beveridge
, Thomas C. Bishop
, David A. Case
, Thomas Cheatham
, Surjit Dixit
, B. Jayaram
, Filip Lankas
, Charles Laughton
, John H. Maddocks
, Alexis Michon
, Roman Osman
, Modesto Orozco
, Alberto Perez
, Tanya Singh
, Nada Spackova
, Jiri Sponer

Institut de Biologie et Chimie des Protéines
Wesleyan University Middletown
Tulane University
Rutgers University–New Brunswick
University of Utah
Zymeworks Inc
Indian Institute of Technology Delhi
Institute of Organic Chemistry and Biochemistry of the Academy of Sciences of the Czech Republic
University of Nottingham
EPFL
Icahn School of Medicine at Mt. Sinai
Institute for Research in Biomedicine
Barcelona Supercomputing Centre
University de Barcelona
Institute of Biophysics of the Czech Academy of Sciences

Research output: Contribution to journal › Article › peer-review

Original language	English
Pages (from-to)	299-313
Number of pages	15
Journal	Nucleic Acids Research
Volume	38
Issue number	1
DOIs	https://doi.org/10.1093/nar/gkp834
State	Published - Nov 6 2009
Externally published	Yes

ASJC Scopus Subject Areas

Genetics

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10.1093/nar/gkp834

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Lavery, R., Zakrzewska, K., Beveridge, D., Bishop, T. C., Case, D. A., Cheatham, T., Dixit, S., Jayaram, B., Lankas, F., Laughton, C., Maddocks, J. H., Michon, A., Osman, R., Orozco, M., Perez, A., Singh, T., Spackova, N., & Sponer, J. (2009). A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA. Nucleic Acids Research, 38(1), 299-313. https://doi.org/10.1093/nar/gkp834

Lavery, R, Zakrzewska, K, Beveridge, D, Bishop, TC, Case, DA, Cheatham, T, Dixit, S, Jayaram, B, Lankas, F, Laughton, C, Maddocks, JH, Michon, A, Osman, R, Orozco, M, Perez, A, Singh, T, Spackova, N & Sponer, J 2009, 'A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA', Nucleic Acids Research, vol. 38, no. 1, pp. 299-313. https://doi.org/10.1093/nar/gkp834

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title = "A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA",

author = "Richard Lavery and Krystyna Zakrzewska and David Beveridge and Bishop, \{Thomas C.\} and Case, \{David A.\} and Thomas Cheatham and Surjit Dixit and B. Jayaram and Filip Lankas and Charles Laughton and Maddocks, \{John H.\} and Alexis Michon and Roman Osman and Modesto Orozco and Alberto Perez and Tanya Singh and Nada Spackova and Jiri Sponer",

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AU - Lavery, Richard

AU - Zakrzewska, Krystyna

AU - Beveridge, David

AU - Bishop, Thomas C.

AU - Case, David A.

AU - Cheatham, Thomas

AU - Dixit, Surjit

AU - Jayaram, B.

AU - Lankas, Filip

AU - Laughton, Charles

AU - Maddocks, John H.

AU - Michon, Alexis

AU - Osman, Roman

AU - Orozco, Modesto

AU - Perez, Alberto

AU - Singh, Tanya

AU - Spackova, Nada

AU - Sponer, Jiri

PY - 2009/11/6

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UR - https://www.scopus.com/pages/publications/70450248170#tab=citedBy

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DO - 10.1093/nar/gkp834

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SN - 0305-1048

VL - 38

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EP - 313

JO - Nucleic Acids Research

JF - Nucleic Acids Research

IS - 1

ER -

A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA

ASJC Scopus Subject Areas

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