NASA GeneLab RNA-seq consensus pipeline: standardized processing of short-read RNA-seq data

Eliah G. Overbey; Amanda M. Saravia-Butler; Zhe Zhang; Komal S. Rathi; Homer Fogle; Willian A. da Silveira; Richard J. Barker; Joseph J. Bass; Afshin Beheshti; Daniel C. Berrios; Elizabeth A. Blaber; Egle Cekanaviciute; Helio A. Costa; Laurence B. Davin; Kathleen M. Fisch; Samrawit G. Gebre; Matthew Geniza; Rachel Gilbert; Simon Gilroy; Gary Hardiman; Raúl Herranz; Yared H. Kidane; Colin P.S. Kruse; Michael D. Lee; Ted Liefeld; Norman G. Lewis; J. Tyson McDonald; Robert Meller; Tejaswini Mishra; Imara Y. Perera; Shayoni Ray; Sigrid S. Reinsch; Sara Brin Rosenthal; Michael Strong; Nathaniel J. Szewczyk; Candice G.T. Tahimic; Deanne M. Taylor; Joshua P. Vandenbrink; Alicia Villacampa; Silvio Weging; Chris Wolverton; Sarah E. Wyatt; Luis Zea; Sylvain V. Costes; Jonathan M. Galazka

doi:10.1016/j.isci.2021.102361

NASA GeneLab RNA-seq consensus pipeline: standardized processing of short-read RNA-seq data

Eliah G. Overbey
, Amanda M. Saravia-Butler
, Zhe Zhang
, Komal S. Rathi
, Homer Fogle
, Willian A. da Silveira
, Richard J. Barker
, Joseph J. Bass
, Afshin Beheshti
, Daniel C. Berrios
, Elizabeth A. Blaber
, Egle Cekanaviciute
, Helio A. Costa
, Laurence B. Davin
, Kathleen M. Fisch
, Samrawit G. Gebre
, Matthew Geniza
, Rachel Gilbert
, Simon Gilroy
, Gary Hardiman

Raúl Herranz, Yared H. Kidane, Colin P.S. Kruse, Michael D. Lee, Ted Liefeld, Norman G. Lewis, J. Tyson McDonald, Robert Meller, Tejaswini Mishra, Imara Y. Perera, Shayoni Ray, Sigrid S. Reinsch, Sara Brin Rosenthal, Michael Strong, Nathaniel J. Szewczyk, Candice G.T. Tahimic, Deanne M. Taylor, Joshua P. Vandenbrink, Alicia Villacampa, Silvio Weging, Chris Wolverton, Sarah E. Wyatt, Luis Zea, Sylvain V. Costes, Jonathan M. Galazka

Biological Sciences

University of Washington
LLC
NASA Ames Research Center
University of Pennsylvania
Queen's University Belfast
University of Wisconsin-Madison
MRC Versus Arthritis Centre for Musculoskeletal Ageing Research
Broad Institute
Rensselaer Polytechnic Institute
Stanford University School of Medicine
Washington State University Pullman
Department of Medicine
Phylos Bioscience, Inc.
Universities Space Research Association
Medical University of South Carolina
Centro de Investigaciones Biológicas Margarita Salas - CSIC
Texas Scottish Rite Hospital for Children
Los Alamos National Laboratory
Blue Marble Space Institute of Science
Georgetown University Medical Center
Morehouse School of Medicine
North Carolina State Univ.
NGM Biopharmaceuticals, Inc.
National Jewish Health
Ohio University Heritage College of Osteopathic Medicine
Univ. of North Florida
University of Pennsylvania Perelman School of Medicine
Martin-Luther University Halle-Wittenberg
Ohio Wesleyan University
Ohio University
University of Colorado Boulder

Research output: Contribution to journal › Article › peer-review

Original language	English
Article number	102361
Journal	iScience
Volume	24
Issue number	4
DOIs	https://doi.org/10.1016/j.isci.2021.102361
State	Published - Apr 23 2021

ASJC Scopus Subject Areas

General

Keywords

Omics
Space Sciences

Access to Document

10.1016/j.isci.2021.102361

Cite this

Overbey, E. G., Saravia-Butler, A. M., Zhang, Z., Rathi, K. S., Fogle, H., da Silveira, W. A., Barker, R. J., Bass, J. J., Beheshti, A., Berrios, D. C., Blaber, E. A., Cekanaviciute, E., Costa, H. A., Davin, L. B., Fisch, K. M., Gebre, S. G., Geniza, M., Gilbert, R., Gilroy, S., ... Galazka, J. M. (2021). NASA GeneLab RNA-seq consensus pipeline: standardized processing of short-read RNA-seq data. iScience, 24(4), Article 102361. https://doi.org/10.1016/j.isci.2021.102361

Overbey, EG, Saravia-Butler, AM, Zhang, Z, Rathi, KS, Fogle, H, da Silveira, WA, Barker, RJ, Bass, JJ, Beheshti, A, Berrios, DC, Blaber, EA, Cekanaviciute, E, Costa, HA, Davin, LB, Fisch, KM, Gebre, SG, Geniza, M, Gilbert, R, Gilroy, S, Hardiman, G, Herranz, R, Kidane, YH, Kruse, CPS, Lee, MD, Liefeld, T, Lewis, NG, McDonald, JT, Meller, R, Mishra, T, Perera, IY, Ray, S, Reinsch, SS, Rosenthal, SB, Strong, M, Szewczyk, NJ, Tahimic, CGT, Taylor, DM, Vandenbrink, JP, Villacampa, A, Weging, S, Wolverton, C, Wyatt, SE, Zea, L, Costes, SV & Galazka, JM 2021, 'NASA GeneLab RNA-seq consensus pipeline: standardized processing of short-read RNA-seq data', iScience, vol. 24, no. 4, 102361. https://doi.org/10.1016/j.isci.2021.102361

@article{a8a04bf26bf5494b8f97e9a769e69065,

title = "NASA GeneLab RNA-seq consensus pipeline: standardized processing of short-read RNA-seq data",

keywords = "Omics, Space Sciences",

author = "Overbey, \{Eliah G.\} and Saravia-Butler, \{Amanda M.\} and Zhe Zhang and Rathi, \{Komal S.\} and Homer Fogle and \{da Silveira\}, \{Willian A.\} and Barker, \{Richard J.\} and Bass, \{Joseph J.\} and Afshin Beheshti and Berrios, \{Daniel C.\} and Blaber, \{Elizabeth A.\} and Egle Cekanaviciute and Costa, \{Helio A.\} and Davin, \{Laurence B.\} and Fisch, \{Kathleen M.\} and Gebre, \{Samrawit G.\} and Matthew Geniza and Rachel Gilbert and Simon Gilroy and Gary Hardiman and Ra{\'u}l Herranz and Kidane, \{Yared H.\} and Kruse, \{Colin P.S.\} and Lee, \{Michael D.\} and Ted Liefeld and Lewis, \{Norman G.\} and McDonald, \{J. Tyson\} and Robert Meller and Tejaswini Mishra and Perera, \{Imara Y.\} and Shayoni Ray and Reinsch, \{Sigrid S.\} and Rosenthal, \{Sara Brin\} and Michael Strong and Szewczyk, \{Nathaniel J.\} and Tahimic, \{Candice G.T.\} and Taylor, \{Deanne M.\} and Vandenbrink, \{Joshua P.\} and Alicia Villacampa and Silvio Weging and Chris Wolverton and Wyatt, \{Sarah E.\} and Luis Zea and Costes, \{Sylvain V.\} and Galazka, \{Jonathan M.\}",

note = "Publisher Copyright: {\textcopyright} 2021",

year = "2021",

month = apr,

day = "23",

doi = "10.1016/j.isci.2021.102361",

language = "English",

volume = "24",

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TY - JOUR

T1 - NASA GeneLab RNA-seq consensus pipeline

T2 - standardized processing of short-read RNA-seq data

AU - Overbey, Eliah G.

AU - Saravia-Butler, Amanda M.

AU - Zhang, Zhe

AU - Rathi, Komal S.

AU - Fogle, Homer

AU - da Silveira, Willian A.

AU - Barker, Richard J.

AU - Bass, Joseph J.

AU - Beheshti, Afshin

AU - Berrios, Daniel C.

AU - Blaber, Elizabeth A.

AU - Cekanaviciute, Egle

AU - Costa, Helio A.

AU - Davin, Laurence B.

AU - Fisch, Kathleen M.

AU - Gebre, Samrawit G.

AU - Geniza, Matthew

AU - Gilbert, Rachel

AU - Gilroy, Simon

AU - Hardiman, Gary

AU - Herranz, Raúl

AU - Kidane, Yared H.

AU - Kruse, Colin P.S.

AU - Lee, Michael D.

AU - Liefeld, Ted

AU - Lewis, Norman G.

AU - McDonald, J. Tyson

AU - Meller, Robert

AU - Mishra, Tejaswini

AU - Perera, Imara Y.

AU - Ray, Shayoni

AU - Reinsch, Sigrid S.

AU - Rosenthal, Sara Brin

AU - Strong, Michael

AU - Szewczyk, Nathaniel J.

AU - Tahimic, Candice G.T.

AU - Taylor, Deanne M.

AU - Vandenbrink, Joshua P.

AU - Villacampa, Alicia

AU - Weging, Silvio

AU - Wolverton, Chris

AU - Wyatt, Sarah E.

AU - Zea, Luis

AU - Costes, Sylvain V.

AU - Galazka, Jonathan M.

PY - 2021/4/23

Y1 - 2021/4/23

KW - Omics

KW - Space Sciences

UR - https://www.scopus.com/pages/publications/85103982485

UR - https://www.scopus.com/pages/publications/85103982485#tab=citedBy

U2 - 10.1016/j.isci.2021.102361

DO - 10.1016/j.isci.2021.102361

M3 - Article

AN - SCOPUS:85103982485

SN - 2589-0042

VL - 24

JO - iScience

JF - iScience

IS - 4

M1 - 102361

ER -

NASA GeneLab RNA-seq consensus pipeline: standardized processing of short-read RNA-seq data

ASJC Scopus Subject Areas

Keywords

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